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Machine Learning Academy · Lesson

From Regression to Classification: Threshold Decisions

Learners will understand why linear regression fails for binary outcomes and see how adding a threshold converts a score into a class label.

From Regression to Classification: Threshold Decisions is a free Machine Learning Academy lesson on CoddyKit — lesson 1 of 4. You can read the complete lesson below for free — then practise it hands-on in the browser with a built-in code editor and a 24/7 AI tutor. It is part of the Machine Learning Academy learning path, one of 4 lessons in the course, and your progress syncs across the web and the CoddyKit app.

What Is Classification?

Classification is the supervised learning task of predicting which category an input belongs to, rather than predicting a continuous number. Examples include:

  • Predicting whether an email is spam or not-spam (binary).
  • Predicting which digit (0-9) is in an image (multi-class).
  • Predicting which disease a patient has given symptoms (multi-class).

The key distinction from regression: the output is a discrete label, not a real number. This seemingly small change requires different algorithms, different loss functions, and different evaluation metrics.

Why Linear Regression Fails for Classification

A tempting approach is to encode class 0 and class 1 as numbers and apply linear regression. For example, encode 'not spam' as 0 and 'spam' as 1, then train a linear regressor. The immediate problem: linear regression produces outputs anywhere from -∞ to +∞, but probabilities must be between 0 and 1. A prediction of 1.7 for class membership is meaningless.

A second problem: linear regression tries to pull the best-fit line through all examples. Adding a clear outlier far from the boundary can rotate the line so it misclassifies many previously-correct examples. The loss function is fundamentally wrong for binary outcomes.

import numpy as np
import matplotlib.pyplot as plt
from sklearn.linear_model import LinearRegression

# Binary dataset: 1 = spam, 0 = not spam
word_count = np.array([10, 20, 25, 30, 40, 50, 200]).reshape(-1, 1)
spam = np.array([0, 0, 0, 1, 1, 1, 1])

model = LinearRegression()
model.fit(word_count, spam)

# Problematic: predictions outside [0,1]
predictions = model.predict([[5], [25], [200]])
print('Linear regression predictions (should be 0 or 1):')
print(predictions)  # might be negative or >1

Threshold Decisions: Converting Scores to Labels

The simplest approach to classification is to use a regression model's output as a score and apply a threshold to convert it to a binary label. If the score is above the threshold, predict class 1; below it, predict class 0.

With a linear regression output, you might choose a threshold of 0.5: anything above 0.5 is spam, below is not-spam. This is called a threshold classifier. While crude, it illustrates the key concept: scores must be converted to decisions, and the choice of threshold involves a trade-off between different types of errors.

import numpy as np
from sklearn.linear_model import LinearRegression

X = np.array([10, 20, 25, 30, 40, 50]).reshape(-1, 1)
y = np.array([0, 0, 0, 1, 1, 1])

model = LinearRegression()
model.fit(X, y)

# Apply threshold to convert scores to labels
X_new = np.array([[15], [28], [45]])
scores = model.predict(X_new)
threshold = 0.5
labels = (scores >= threshold).astype(int)

for x, score, label in zip(X_new.ravel(), scores, labels):
    print(f'x={x}: score={score:.2f} -> label={label}')

The Problems with a Fixed Threshold

Choosing a threshold of 0.5 is arbitrary. The optimal threshold depends on the relative cost of different error types:

  • A false positive (predict spam when it is not) means a legitimate email lands in the spam folder.
  • A false negative (predict not-spam when it is spam) means junk email reaches the inbox.

In medical diagnosis, the costs are much more asymmetric: a false negative (missing a real disease) may be catastrophic, so you lower the threshold to catch more true positives even at the cost of more false alarms. The threshold is a business decision, not a mathematical one.

import numpy as np

# Same scores, different thresholds give different label distributions
scores = np.array([0.2, 0.45, 0.55, 0.7, 0.85, 0.95])
y_true = np.array([0, 0, 1, 1, 1, 1])

for threshold in [0.3, 0.5, 0.7]:
    labels = (scores >= threshold).astype(int)
    correct = (labels == y_true).sum()
    print(f'Threshold {threshold}: labels={labels.tolist()}, correct={correct}/{len(y_true)}')

Binary vs Multi-Class Classification

Binary classification has exactly two possible output classes (spam/not-spam, disease/healthy, fraud/legitimate). Multi-class classification has three or more classes (which digit 0-9, which species of flower, which product category).

Most binary classifiers extend to multi-class through two strategies:

  • One-vs-Rest (OvR): train one binary classifier per class, predict the class whose classifier is most confident.
  • One-vs-One (OvO): train a binary classifier for every pair of classes, take a majority vote.

Scikit-learn handles this automatically for most algorithms.

from sklearn.linear_model import LogisticRegression
from sklearn.datasets import load_iris
from sklearn.model_selection import train_test_split

# Iris has 3 classes: sklearn handles multi-class automatically
X, y = load_iris(return_X_y=True)
X_train, X_test, y_train, y_test = train_test_split(X, y, random_state=42)

model = LogisticRegression(multi_class='ovr', max_iter=200)
model.fit(X_train, y_train)
print('Test accuracy:', model.score(X_test, y_test).round(3))
print('Classes:', model.classes_)

Decision Boundaries: Where the Model Decides

A classifier divides the feature space into regions, one for each class. The boundary between regions is called the decision boundary. For a linear classifier, the decision boundary is a straight line (in 2D), a plane (in 3D), or a hyperplane (in higher dimensions).

The location and shape of the decision boundary is what the algorithm learns during training. Visualising the decision boundary on a 2D dataset is one of the best ways to build intuition for how a classifier works and why its predictions are correct or wrong in specific regions of the feature space.

import numpy as np
import matplotlib.pyplot as plt
from sklearn.linear_model import LogisticRegression
from sklearn.datasets import make_classification

X, y = make_classification(n_samples=100, n_features=2, n_redundant=0, random_state=42)
model = LogisticRegression()
model.fit(X, y)

# Plot decision boundary
xx, yy = np.meshgrid(np.linspace(-3, 3, 200), np.linspace(-3, 3, 200))
Z = model.predict(np.c_[xx.ravel(), yy.ravel()]).reshape(xx.shape)

plt.contourf(xx, yy, Z, alpha=0.3)
plt.scatter(X[:, 0], X[:, 1], c=y, edgecolors='k', alpha=0.8)
plt.title('Linear Decision Boundary')
plt.show()

Accuracy: The Most Intuitive Metric

Accuracy is the fraction of predictions that are correct: accuracy = correct_predictions / total_predictions. It is the most intuitive metric and appropriate when classes are balanced and all errors are equally costly.

However, accuracy is a trap for imbalanced datasets. If 95% of emails are legitimate and your model predicts 'not spam' for everything, it achieves 95% accuracy while completely failing at its job — never catching a single spam email. This is the accuracy paradox, and it motivates more informative metrics like precision and recall.

from sklearn.metrics import accuracy_score
import numpy as np

# Balanced dataset
y_true_balanced = np.array([0, 1, 0, 1, 0, 1, 0, 1])
y_pred_balanced = np.array([0, 1, 0, 0, 0, 1, 1, 1])
print(f'Balanced accuracy: {accuracy_score(y_true_balanced, y_pred_balanced):.2f}')  # 0.75

# Imbalanced: 95% class 0
y_true_imb = np.array([0]*95 + [1]*5)
y_pred_always0 = np.zeros(100, dtype=int)
print(f'Imbalanced accuracy (always predict 0): {accuracy_score(y_true_imb, y_pred_always0):.2f}')  # 0.95!

The Predict vs Predict_proba Distinction

Most scikit-learn classifiers provide two prediction methods:

  • predict(X) — returns the hard class label after applying the default threshold (usually 0.5 for binary classification).
  • predict_proba(X) — returns a probability array of shape (n_samples, n_classes), giving the model's confidence in each class.

Using predict_proba gives you much more control because you can apply any threshold. This is essential for business applications where the optimal threshold is not 0.5.

from sklearn.linear_model import LogisticRegression
from sklearn.datasets import make_classification
from sklearn.model_selection import train_test_split
import numpy as np

X, y = make_classification(n_samples=200, n_features=5, random_state=42)
X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.2)

model = LogisticRegression()
model.fit(X_train, y_train)

# Hard labels
hard_labels = model.predict(X_test[:5])
print('Hard labels:', hard_labels)

# Probabilities
probas = model.predict_proba(X_test[:5])
print('Probabilities (class 0, class 1):')
for row in probas:
    print(f'  Not spam: {row[0]:.2f}  |  Spam: {row[1]:.2f}')

Custom Thresholds in Practice

Applying a custom threshold to probability outputs lets you tune the trade-off between false positives and false negatives without retraining the model. This is called threshold moving and is a common post-processing step in production systems.

Lower threshold → model flags more examples as positive → more true positives but also more false positives. Higher threshold → more conservative → fewer false positives but more false negatives. The right threshold is determined by the cost of each error type in your specific application.

import numpy as np
from sklearn.metrics import confusion_matrix

# Get probability scores for positive class
spam_probas = model.predict_proba(X_test)[:, 1]

print('Confusion matrices at different thresholds:')
for threshold in [0.3, 0.5, 0.7]:
    y_pred = (spam_probas >= threshold).astype(int)
    cm = confusion_matrix(y_test, y_pred)
    tp = cm[1, 1]
    fp = cm[0, 1]
    fn = cm[1, 0]
    tn = cm[0, 0]
    print(f'\nThreshold {threshold}: TP={tp} FP={fp} FN={fn} TN={tn}')

Common Classification Algorithms Overview

Linear regression with a threshold is just the beginning. Scikit-learn provides many dedicated classification algorithms, each with strengths and weaknesses:

  • Logistic Regression — the proper probabilistic linear classifier (next lesson).
  • K-Nearest Neighbors — classifies by majority vote of nearest training examples.
  • Decision Trees — rule-based, fully interpretable.
  • Random Forest — ensemble of trees, robust and powerful.
  • SVM — finds the maximum-margin hyperplane.
  • Naive Bayes — fast, probabilistic, excellent for text.
from sklearn.linear_model import LogisticRegression
from sklearn.tree import DecisionTreeClassifier
from sklearn.neighbors import KNeighborsClassifier
from sklearn.ensemble import RandomForestClassifier
from sklearn.datasets import load_breast_cancer
from sklearn.model_selection import cross_val_score

X, y = load_breast_cancer(return_X_y=True)

for name, clf in [('Logistic Regression', LogisticRegression(max_iter=1000)),
                  ('Decision Tree', DecisionTreeClassifier()),
                  ('KNN', KNeighborsClassifier()),
                  ('Random Forest', RandomForestClassifier())]:
    score = cross_val_score(clf, X, y, cv=5, scoring='accuracy').mean()
    print(f'{name}: {score:.3f}')

Quick Check

Test your understanding of Machine Learning with Python concepts from this lesson.

Lesson Recap

In this lesson you learned: linear regression fails for binary classification because it produces unbounded outputs that cannot represent probabilities, applying a threshold converts probability scores to class labels with a tunable trade-off between false positives and false negatives, and accuracy is misleading for imbalanced datasets — recall and precision provide a more complete picture. Next up we study logistic regression — the proper probabilistic linear classifier that uses the sigmoid function to produce calibrated probabilities.

Frequently asked questions

Is the “From Regression to Classification: Threshold Decisions” lesson free?

Yes — the full text of “From Regression to Classification: Threshold Decisions” is free to read here on the web, and the Machine Learning Academy course includes 4 lessons in total. To practise it interactively (a built-in code editor and a 24/7 AI tutor) and unlock the rest of the Machine Learning Academy course, upgrade to CoddyKit PRO.

What will I learn in “From Regression to Classification: Threshold Decisions”?

Learners will understand why linear regression fails for binary outcomes and see how adding a threshold converts a score into a class label. You practise Machine Learning Academy with hands-on code you run directly in the browser, and a 24/7 AI tutor answers your questions as you work through the lesson.

Do I need any experience to start Machine Learning Academy?

No prior experience is required. Machine Learning Academy on CoddyKit is structured for beginners through advanced learners; this is — lesson 1 of 4, so you can start here or from the beginning and move at your own pace.

How long does the “From Regression to Classification: Threshold Decisions” lesson take?

Most CoddyKit lessons take about 5–10 minutes. Each one is bite-sized and interactive, so you make steady progress and pick up exactly where you left off across the web and the app.

Can I write and run code in this Machine Learning Academy lesson?

Yes. Every Machine Learning Academy lesson includes a built-in code editor, so you write and run real code right in your browser and get instant AI feedback — no local setup required.

All lessons in this course

  1. From Regression to Classification: Threshold Decisions
  2. Logistic Regression and the Sigmoid Function
  3. The Confusion Matrix Explained
  4. Precision, Recall, and F1-Score in Practice
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